Difference between revisions of "Medical Imaging Example Meshes"

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m (Angelos moved page NRL Example Meshes to Medical Imaging Example Meshes without leaving a redirect)
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=Role of Delta=
 
 
Input Image: Knee-Char.mha:
 
# The size of the input image is: (512x512x119)
 
# Spacing of the input image: (0.27734,0.27734,1)
 
# MinimumPhysicalSize = 119 * 1 = 119
 
# Max delta value that possibly will not cause problems is: 119 / 5 = 23.8
 
 
{| class="wikitable"
 
! Delta !! # Vertices !! # Tetrahedra
 
|-
 
| 23.8 || 70 || 153
 
|-
 
| 20 || 87 || 222
 
|-
 
| 15 || 219 || 668
 
|-
 
| 10 || 551 || 1580
 
|-
 
|  5 || 2858 || 10073
 
|-
 
|  4 || 4544 || 16569
 
|-
 
|  3 || 9279 || 35131
 
|-
 
|  2 || 24631 || 98822
 
|-
 
|  1.5 || 50371 || 209659
 
|-
 
|  1 || 139515 || 613799
 
|-
 
|  0.5 || 830423 || 3999734
 
|}
 
 
 
=Head-Neck=  
 
=Head-Neck=  
 
[https://odu.box.com/s/09l553pqu319jdj3isam6dmukfy67ouq Input Image]  
 
[https://odu.box.com/s/09l553pqu319jdj3isam6dmukfy67ouq Input Image]  

Revision as of 18:56, 24 February 2020

Head-Neck

Input Image

Generated mesh with delta = 2, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 2 --output ./Head-Neck,d=2.vtk

Head-Neck,d=2.png

Generated mesh with delta = 1.5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk

Head-Neck,d=1.5.png

Brain-With-Tumor-Case17

Input Image

Generated mesh with delta = 1,5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk

Brain-With-Tumor-Case17,d=1.5.png

Generated mesh with delta = 1.5 and volume-grading, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk

Brain-With-Tumor-Case17,d=1.5,grading.png

Knee-Char

Input Image

Generated mesh with delta = 1,5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --output ./Knee-Char,d=1.5.vtk

Knee-Char,d=1.5.png

Generated mesh with delta = 1.5 and volume-grading, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --volume-grading --output ./Knee-Char,d=1.5,grading.vtk

Knee-Char,d=1.5,grading.png

Ircad2-Removed-Tissues

Input Image

Generated mesh with delta = 5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk

Ircad2-Removed-Tissues,d=5.png