Difference between revisions of "Medical Imaging Example Meshes"

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[https://odu.box.com/s/01bxjptf4grfuvxj3a9g6frfosyu6dbt Input Image]  
 
[https://odu.box.com/s/01bxjptf4grfuvxj3a9g6frfosyu6dbt Input Image]  
  
Generated mesh with delta = 5, https://odu.box.com/s/ddja85vt80osbn76v7pih82wh0kiuqqp Output Mesh]
+
Generated mesh with delta = 5, [https://odu.box.com/s/ddja85vt80osbn76v7pih82wh0kiuqqp Output Mesh]
 
<pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk</pre>
 
<pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk</pre>
  
 
[[File:Ircad2-Removed-Tissues,d=5.png|500px|Ircad2-Removed-Tissues,d=5.png]]
 
[[File:Ircad2-Removed-Tissues,d=5.png|500px|Ircad2-Removed-Tissues,d=5.png]]

Revision as of 14:42, 18 February 2020

Role of Delta

Table of produced number of Tetrahedra for certain values of delta using the image: Brain-With-Tumor-Case17.

The size of the input image is: (448,512,176) Spacing of the input image: (0.488281,0.488281,1)

MinimumPhysicalSize = 176 * 1 = 176

Delta Amount of Tetrahedra
2.21 7181
2.34 5922

Head-Neck

Input Image

Generated mesh with delta = 2, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 2 --output ./Head-Neck,d=2.vtk

Head-Neck,d=2.png

Generated mesh with delta = 1.5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk

Head-Neck,d=1.5.png

Brain-With-Tumor-Case17

Input Image

Generated mesh with delta = 1,5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk

Brain-With-Tumor-Case17,d=1.5.png

Generated mesh with delta = 1.5 and volume-grading, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk

Brain-With-Tumor-Case17,d=1.5,grading.png

Knee-Char

Input Image

Generated mesh with delta = 1,5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --output ./Knee-Char,d=1.5.vtk

Knee-Char,d=1.5.png

Generated mesh with delta = 1.5 and volume-grading, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --volume-grading --output ./Knee-Char,d=1.5,grading.vtk

Knee-Char,d=1.5,grading.png

Big-Brain

Input Image

Generated mesh with delta = 2, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Big-Brain.mha --delta 2 --output ./Big-Brain,d=2.vtk

Big-Brain,d=2.png

Ircad2-Removed-Tissues

Input Image

Generated mesh with delta = 5, Output Mesh

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk

Ircad2-Removed-Tissues,d=5.png