Difference between revisions of "Medical Imaging Example Meshes"
From crtc.cs.odu.edu
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Generated mesh with delta = 2, [https://odu.box.com/s/7kgv263qvebk55077nny4l2n7ienpahf Output Mesh] | Generated mesh with delta = 2, [https://odu.box.com/s/7kgv263qvebk55077nny4l2n7ienpahf Output Mesh] | ||
| − | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha - | + | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 2 --output ./Head-Neck,d=2.vtk</pre> |
[[File:Head-Neck,d=2.png|500px|Head-Neck,d=2.png]] | [[File:Head-Neck,d=2.png|500px|Head-Neck,d=2.png]] | ||
Generated mesh with delta = 1.5, [https://odu.box.com/s/sfjb83whac8rhn1ykuuxmektprxtci78 Output Mesh] | Generated mesh with delta = 1.5, [https://odu.box.com/s/sfjb83whac8rhn1ykuuxmektprxtci78 Output Mesh] | ||
| − | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha - | + | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=2.vtk</pre> |
[[File:Head-Neck,d=1.5.png|500px|Head-Neck,d=1.5.png]] | [[File:Head-Neck,d=1.5.png|500px|Head-Neck,d=1.5.png]] | ||
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Generated mesh with delta = 5, [https://odu.box.com/s/7kgv263qvebk55077nny4l2n7ienpahf Output Mesh] | Generated mesh with delta = 5, [https://odu.box.com/s/7kgv263qvebk55077nny4l2n7ienpahf Output Mesh] | ||
| − | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd - | + | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk</pre> |
[[File:Ircad2-Removed-Tissues,d=5.png|500px|Ircad2-Removed-Tissues,d=5.png]] | [[File:Ircad2-Removed-Tissues,d=5.png|500px|Ircad2-Removed-Tissues,d=5.png]] | ||
| + | |||
| + | =Brain-With-Tumor-Case17= | ||
| + | [https://odu.box.com/s/cjvg22e4txenhv1xh4mnqegowyfyut9y Input Image] | ||
| + | |||
| + | Generated mesh with delta = 1,5, [https://odu.box.com/s/wfeqw6c65si0kync8yi20cychyqxmpcs Output Mesh] | ||
| + | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk</pre> | ||
| + | |||
| + | [[File:Brain-With-Tumor-Case17,d=1.5.png|500px|Brain-With-Tumor-Case17,d=1.5.png]] | ||
| + | |||
| + | Generated mesh with delta = 1.5 and volume-grading, [https://odu.box.com/s/83pl6vgzabzclsbqyzujmtqjbfckil2s Output Mesh] | ||
| + | <pre>docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk</pre> | ||
| + | |||
| + | [[File:Brain-With-Tumor-Case17,d=1.5,grading.png|500px|Brain-With-Tumor-Case17,d=1.5,grading.png]] | ||
Revision as of 18:36, 17 February 2020
Head-Neck
Generated mesh with delta = 2, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 2 --output ./Head-Neck,d=2.vtk
Generated mesh with delta = 1.5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=2.vtk
Ircad2-Removed-Tissues
Generated mesh with delta = 5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk
Brain-With-Tumor-Case17
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk
