Medical Imaging Example Meshes: Difference between revisions

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=Role of Delta=
Input Image: Knee-Char.mha:
# The size of the input image is: (512x512x119)
# Spacing of the input image: (0.27734,0.27734,1)
# MinimumPhysicalSize = 119 * 1 = 119
# Max delta value that possibly will not cause problems is: 119 / 5 = 23.8
{| class="wikitable"
! Delta !! # Vertices !! # Tetrahedra
|-
| 23.8 || 70 || 153
|-
| 20 || 87 || 222
|-
| 15 || 219 || 668
|-
| 10 || 551 || 1580
|-
|  5 || 2858 || 10073
|-
|  4 || 4544 || 16569
|-
|  3 || 9279 || 35131
|-
|  2 || 24631 || 98822
|-
|  1.5 || 50371 || 209659
|-
|  1 || 139515 || 613799
|-
|  0.5 || 830423 || 3999734
|}
=Head-Neck=  
=Head-Neck=  
[https://odu.box.com/s/09l553pqu319jdj3isam6dmukfy67ouq Input Image]  
[https://odu.box.com/s/09l553pqu319jdj3isam6dmukfy67ouq Input Image]  

Revision as of 13:56, 24 February 2020

Head-Neck

Input Image

Generated mesh with delta = 2, Output Mesh 

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 2 --output ./Head-Neck,d=2.vtk

Head-Neck,d=2.png

Generated mesh with delta = 1.5, Output Mesh 

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk

Head-Neck,d=1.5.png

Brain-With-Tumor-Case17

Input Image

Generated mesh with delta = 1,5, Output Mesh 

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk

Brain-With-Tumor-Case17,d=1.5.png

Generated mesh with delta = 1.5 and volume-grading, Output Mesh 

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk

Brain-With-Tumor-Case17,d=1.5,grading.png

Knee-Char

Input Image

Generated mesh with delta = 1,5, Output Mesh 

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --output ./Knee-Char,d=1.5.vtk

Knee-Char,d=1.5.png

Generated mesh with delta = 1.5 and volume-grading, Output Mesh 

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --volume-grading --output ./Knee-Char,d=1.5,grading.vtk

Knee-Char,d=1.5,grading.png

Ircad2-Removed-Tissues

Input Image

Generated mesh with delta = 5, Output Mesh 

docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk

Ircad2-Removed-Tissues,d=5.png

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