Internal:PODM 4D: Difference between revisions
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Apply past commits of PODM3D to PODM4D where applicable (TODO: ¾ Done): | Apply past commits of PODM3D to PODM4D where applicable (TODO: ¾ Done): | ||
# Add CLI11 command-line parser✔ | # Add CLI11 command-line parser✔ | ||
# Decouple Args from PODM✔ | # Decouple Args from PODM✔ | ||
# Create setArguments function✔ | # Create setArguments function✔ | ||
| Line 31: | Line 30: | ||
# Remove IOs from PODM✔ | # Remove IOs from PODM✔ | ||
# Separate the interface, the IOs and the filters from PODM✔ | # Separate the interface, the IOs and the filters from PODM✔ | ||
# | # Add verbosity flag to control output text✔ | ||
# Create threading pinning flag✔ | # Create threading pinning flag✔ | ||
# Create memory limit flag✔ | # Create memory limit flag✔ | ||
| Line 37: | Line 36: | ||
# Create a function that checks if the cpu is hyperthreaded✔ | # Create a function that checks if the cpu is hyperthreaded✔ | ||
# Compute the amount of cores/blades/nodes in order to make them work for docker✔ | # Compute the amount of cores/blades/nodes in order to make them work for docker✔ | ||
# | # Add Image Segmentation ✔ | ||
# Set a warning if delta > min-spacing * min-dimension-size / 5✔ | |||
# Add Linear Interpolation (TODO: Need to Implement MeshIO for 4D Meshes) | # Add Linear Interpolation (TODO: Need to Implement MeshIO for 4D Meshes) | ||
# Create setSizingFunction(image, minimumElementEdgeSize, elementWeightLimit) (TODO) | # Create setSizingFunction(image, minimumElementEdgeSize, elementWeightLimit) (TODO) | ||
# Fix the null pointer to cell of vertex issue if NO_GOOD_ANGLES flag is not defined (TODO) | |||
=Adaptivity= | =Adaptivity= | ||
Revision as of 09:07, 19 February 2020
Proposal
- Write a summary of PODM4D for SURA proposal:
- Extracted the content of PODM4D paper for SURA proposal✔
- Add algorithm details as it was done in 3D case✔
Documentation
- Read PODM4D paper (TODO: ½ Done)
- Write a proper README.md file✔
- Create Documentation of PODM 4D for Medical Image Computing and Computational Nuclear Femptography (TODO)
Explore Code
- Install all PODM4D libraries✔
- Compile PODM4D code✔
- Restructure repository of PODM4D based on Software engineering standards✔
Execution examples
- Heart4DChar (Panos’ data)✔
- Heart4D-0x (x ε [1,5]) (Panos’ data)✔
- Sphere4D-D1xD2xD3xD4 (Di ε [3, 100]) (Panos’ data)✔
- HyperCube-sideLength=l (l=5,10) (generated by SIDG)✔
Functionality
Apply past commits of PODM3D to PODM4D where applicable (TODO: ¾ Done):
- Add CLI11 command-line parser✔
- Decouple Args from PODM✔
- Create setArguments function✔
- Create setInputImage(ImageType::Pointer)✔
- Remove IOs from PODM✔
- Separate the interface, the IOs and the filters from PODM✔
- Add verbosity flag to control output text✔
- Create threading pinning flag✔
- Create memory limit flag✔
- Remove unused defined flags✔
- Create a function that checks if the cpu is hyperthreaded✔
- Compute the amount of cores/blades/nodes in order to make them work for docker✔
- Add Image Segmentation ✔
- Set a warning if delta > min-spacing * min-dimension-size / 5✔
- Add Linear Interpolation (TODO: Need to Implement MeshIO for 4D Meshes)
- Create setSizingFunction(image, minimumElementEdgeSize, elementWeightLimit) (TODO)
- Fix the null pointer to cell of vertex issue if NO_GOOD_ANGLES flag is not defined (TODO)
Adaptivity
Implementation of Sizing Function
- Create an extra Rule which will be a user-defined sizing-function that gets a tetrahedron when all rules are met (TODO)
Visualization
Production Stage
Set it up on Docker, as it was done in PODM3D (TODO)