Difference between revisions of "Medical Imaging Example Meshes"
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The directory containing the input data is [https://odu.box.com/s/wd0i18giti2zo330y19xhkqu8wjzgf7j Medical_Imaging_Data]. | The directory containing the input data is [https://odu.box.com/s/wd0i18giti2zo330y19xhkqu8wjzgf7j Medical_Imaging_Data]. | ||
| − | =Head-Neck | + | =Head-Neck= |
| − | * Input | + | * Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002) |
| − | * | + | * Delta = 2.49023 (Default calculated value) case: 205,416 tetrahedra |
| − | * | + | * Delta = 1.5 case: 770,853 tetrahedra |
| + | [[File:Head-Neck,d=2.49023.png|500px|Head-Neck,d=2.49023.png]] | ||
<gallery mode="packed" heights=350px> | <gallery mode="packed" heights=350px> | ||
| − | File: | + | File:Head-Neck,d=1.5.png |
| − | |||
</gallery> | </gallery> | ||
Commands to generate meshes : | Commands to generate meshes : | ||
| − | ''' | + | '''Delta = 2.49023 :''' [ Output Mesh] |
<pre> | <pre> | ||
| − | docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./ | + | docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk |
</pre> | </pre> | ||
| − | ''' | + | '''Delta = 1.5 :''' [ Output Mesh] |
<pre> | <pre> | ||
| − | docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./ | + | docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk |
</pre> | </pre> | ||
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=Brain-With-Tumor-Case17= | =Brain-With-Tumor-Case17= | ||
Revision as of 17:17, 26 February 2020
The directory containing the input data is Medical_Imaging_Data.
Head-Neck
- Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002)
- Delta = 2.49023 (Default calculated value) case: 205,416 tetrahedra
- Delta = 1.5 case: 770,853 tetrahedra
Commands to generate meshes :
Delta = 2.49023 : [ Output Mesh]
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk
Delta = 1.5 : [ Output Mesh]
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk
Brain-With-Tumor-Case17
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk
Knee-Char
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Knee-Char.mha --delta 1.5 --output ./Knee-Char,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Knee-Char.mha --delta 1.5 --volume-grading --output ./Knee-Char,d=1.5,grading.vtk
Ircad2-Removed-Tissues
Generated mesh with delta = 5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk
