Difference between revisions of "Medical Imaging Example Meshes"
From crtc.cs.odu.edu
Spyridon97 (talk | contribs) |
Spyridon97 (talk | contribs) (→Role of Delta) |
||
| Line 3: | Line 3: | ||
Table of produced number of Tetrahedra for certain values of delta using the image: Brain-With-Tumor-Case17. | Table of produced number of Tetrahedra for certain values of delta using the image: Brain-With-Tumor-Case17. | ||
| − | The size of the input image is: ( | + | The size of the input image is: (512x512x119) |
| − | Spacing of the input image: (0. | + | Spacing of the input image: (0.27734,0.27734,1) |
| − | MinimumPhysicalSize = | + | MinimumPhysicalSize = 119 * 1 = 119 |
| + | Max value that possible will not cause problems is: 119 / 5 = 23.8 | ||
{| class="wikitable" | {| class="wikitable" | ||
! Delta !! Amount of Tetrahedra | ! Delta !! Amount of Tetrahedra | ||
|- | |- | ||
| − | | | + | | 23.8 || 7181 |
|- | |- | ||
| 2.34 || 5922 | | 2.34 || 5922 | ||
| + | |- | ||
| + | | || | ||
| + | |- | ||
| + | | || | ||
| + | |- | ||
| + | | || | ||
| + | |- | ||
| + | | || | ||
| + | |- | ||
| + | | || | ||
| + | |- | ||
| + | | || | ||
| + | |- | ||
| + | | || | ||
| + | |- | ||
| + | | || | ||
| + | |||
|} | |} | ||
Revision as of 15:03, 18 February 2020
Contents
Role of Delta
Table of produced number of Tetrahedra for certain values of delta using the image: Brain-With-Tumor-Case17.
The size of the input image is: (512x512x119) Spacing of the input image: (0.27734,0.27734,1)
MinimumPhysicalSize = 119 * 1 = 119 Max value that possible will not cause problems is: 119 / 5 = 23.8
| Delta | Amount of Tetrahedra |
|---|---|
| 23.8 | 7181 |
| 2.34 | 5922 |
Head-Neck
Generated mesh with delta = 2, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 2 --output ./Head-Neck,d=2.vtk
Generated mesh with delta = 1.5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk
Brain-With-Tumor-Case17
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk
Knee-Char
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --output ./Knee-Char,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --volume-grading --output ./Knee-Char,d=1.5,grading.vtk
Big-Brain
Generated mesh with delta = 2, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Big-Brain.mha --delta 2 --output ./Big-Brain,d=2.vtk
Ircad2-Removed-Tissues
Generated mesh with delta = 5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk
