CNF:CNF: Difference between revisions

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== Project Description ==
'''Project Description'''
 
We propose an interdisciplinary project to leverage advanced computational methods from medical imaging for processing phase space distributions in nuclear femtography experiments, with the aim to enable next-generation process simulations, data analyses, and physics model comparisons.  
We propose an interdisciplinary project to leverage advanced computational methods from medical imaging for processing phase space distributions in nuclear femtography experiments, with the aim to enable next-generation process simulations, data analyses, and physics model comparisons.  


'''The objectives are:''' (O1) Implement an n-dimensional Exact Signed Euclidean Distance Transform for image-to-mesh conversion of phase space data; (O2) Implement an n-dimensional mesh-based representation of phase space data using tessellation methods and test it in low-dimensional scenarios (n=3); (O3) Explore potential physics model comparisons enabled by the new technologies.
== Objectives ==
 
* (O1) Implement an n-dimensional Exact Signed Euclidean Distance Transform for image-to-mesh conversion of phase space data  
'''Short-term deliverables (6 months):'''
* (O2) Implement an n-dimensional mesh-based representation of phase space data using tessellation methods and test it in low-dimensional scenarios (n=3)  
 
* (O3) Explore potential physics model comparisons enabled by the new technologies  
(a) Post-processing of the output of the PARTONS GPD physics model for generation of NRDD/DICOM images and their segmentation (by July 1); -- DONE
 
(b) generation of n-dimensional sequence of tessellations for numerical integration (by July 1);  Gagik?
 
(c) use of n-dimensional tessellations for efficient sampling of physics model and generation of event distributions for physics analysis;  Gagik?
 
 
(d) experiment with 3D Slicer and Paraview open source imaging and visualization systems to display visual representations of the entire space and/or m-slices, with m < n (by Sept. 30);  -- DONE
 
 
(e) topical workshop including experts in imaging, exascale computing, uncertainty quantification, and nuclear physics to guide further developments (by Sept. 30). -- Invited visitors and agenda is completed. The workshop will take place on August 19 and 20 at JLab.
 
 
 
 
[[CNF Demo]]
 
[https://odu.box.com/s/ce6wc1ht1f96jx7lpafys1ue1piiyekc Shared box directory] (restricted access)
 
[https://git-community.cs.odu.edu/aangelop/PODM-Superbuild PODM Docker image source files] (restricted access)
 
[http://www.cs.odu.edu/crtc/cnf_project/index.html CNF Tools website]
 
[https://git-community.cs.odu.edu/ctsolakis/cnf_website CNF Tools webite build files] (restricted access)


https://kitware.github.io/paraview-glance/doc/
== Short-term Deliverables (6 months) ==
* (a) Post-processing of the output of the PARTONS GPD physics model for generation of NRDD/DICOM images and their segmentation (by July 1); -- [<span style="color:green">DONE</span>]
** [http://www.cs.odu.edu/crtc/cnf_project/index.html CNF Tools]
* (b) Generation of n-dimensional sequence of tessellations for numerical integration (by July 1);  Gagik? -- [<span style="color:blue">IN PROGRESS</span>]
* (c) Use of n-dimensional tessellations for efficient sampling of physics model and generation of event distributions for physics analysis;  Gagik? -- [<span style="color:blue">IN PROGRESS</span>]
* (d) Experiment with 3D Slicer and Paraview open source imaging and visualization systems to display visual representations of the entire space and/or m-slices, with m < n (by Sept. 30);  -- [<span style="color:green">DONE</span>]
** [http://www.cs.odu.edu/crtc/videos/paraview.html Imaging Demo using Paraview]
** [https://kitware.github.io/paraview-glance/doc/ Paraview Glance]
* (e) Topical workshop including experts in imaging, exascale computing, uncertainty quantification, and nuclear physics to guide further developments (by Sept. 30). -- [<span style="color:blue">IN PROGRESS</span>]
** Invited visitors and agenda is completed.
** The [https://cepm.cs.odu.edu/CNF_Imaging_Workshop CNF Imaging Workshop] will take place on August 19 and 20 at JLab.


[https://cepm.cs.odu.edu/CNF_Imaging_Workshop CNF Imaging Workshop]
== Restricted Access ==
* [https://odu.box.com/s/ce6wc1ht1f96jx7lpafys1ue1piiyekc Shared box directory]
* [https://git-community.cs.odu.edu/aangelop/PODM-Superbuild PODM Docker image source files]
* [https://git-community.cs.odu.edu/ctsolakis/cnf_website CNF Tools website build files]

Revision as of 15:39, 9 July 2019

Project Description

We propose an interdisciplinary project to leverage advanced computational methods from medical imaging for processing phase space distributions in nuclear femtography experiments, with the aim to enable next-generation process simulations, data analyses, and physics model comparisons.

Objectives

  • (O1) Implement an n-dimensional Exact Signed Euclidean Distance Transform for image-to-mesh conversion of phase space data
  • (O2) Implement an n-dimensional mesh-based representation of phase space data using tessellation methods and test it in low-dimensional scenarios (n=3)
  • (O3) Explore potential physics model comparisons enabled by the new technologies

Short-term Deliverables (6 months)

  • (a) Post-processing of the output of the PARTONS GPD physics model for generation of NRDD/DICOM images and their segmentation (by July 1); -- [DONE]
  • (b) Generation of n-dimensional sequence of tessellations for numerical integration (by July 1); Gagik? -- [IN PROGRESS]
  • (c) Use of n-dimensional tessellations for efficient sampling of physics model and generation of event distributions for physics analysis; Gagik? -- [IN PROGRESS]
  • (d) Experiment with 3D Slicer and Paraview open source imaging and visualization systems to display visual representations of the entire space and/or m-slices, with m < n (by Sept. 30); -- [DONE]
  • (e) Topical workshop including experts in imaging, exascale computing, uncertainty quantification, and nuclear physics to guide further developments (by Sept. 30). -- [IN PROGRESS]
    • Invited visitors and agenda is completed.
    • The CNF Imaging Workshop will take place on August 19 and 20 at JLab.

Restricted Access

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