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== Eleni, Thomas , Angelos==
== Current Students ==
[[Internal:ReportCloud | Cloud Report]]
 
=== Polykarpos ===
[[PREMA Shared Memory]]
 
[[Internal:IMR_2018_Runtime_Systems | IMR 2018 Runtime Systems]]
 
[[Intel Xeon Phi and High Bandwidth Memory]]
 
[[CNF:Machine_Learning | CNF Machine Learning Project]]
 
[[CNF:ML_Data_Denoise | Track denoising with ML]]
 
[https://docs.google.com/presentation/d/1rF3rElnBCsKR_Z_66nTCmMqSZa3b51mEzswiLz_3d3Q/edit?usp=sharing  CNF HPC Workshop Slides]


[[Internal:Preprocess_Medical_Images | Preprocessing of Medical Images]]
[[PREMA SW4| SW4 Benchmark with PREMA]]


[[Internal:Execution_And_Evaluation_Medical_Images | Execution and Evaluation of Medical Imaging data]]
[[PDR.PODM Distributed Memory| PDR.PODM.PREMA]]


== Angelos ==
[https://www.overleaf.com/read/vgwrypshrkqp PREMA-Argobots Paper]


[[Internal:GPCD | GPCD]]
[https://olddominion-my.sharepoint.com/:b:/g/personal/pthom001_odu_edu/EYiL4h5xKThJgjyvbsFbZe4BH_4pr3rR-9x-gvErpDaq3A?e=hdy7ii Heterogeneousarchitecturesforcomputationalintensiveapplications:Acost-effectivenessanalysis]


[[Internal:APBNRRExecutionStatus | APBNRR Execution Status]]
[[Internal:TAPAS]]


[[Internal:PAPBNRRComparison | Pristine vs New PAPBNRR]]
=== Kevin ===
[[Internal:Weekly_Notes | Timetable/Primary Reports/Notes]]


[[Internal:APBNRRMachineLearning | APBNRR Machine Learning]]
[[Internal:PDR_AFLR |PDR.AFLR Stability and Scalability]]


[[Internal: SlicerExtensions | Slicer Extensions]]
[[Internal:PDR_AFLR_Progress_Report |PDR.AFLR Progress Report]]


== Joi ==
[[AFLR_Point_Spacing/Distribution_Function_Parameters | AFLR Point Spacing/Distribution Function Parameters]]
[[Tasks | Tasks ]]


[[I2M_Conversion_Tool | Image-to-Mesh (I2M) Conversion Tool]]
[[Internal:PDR_AFLR_Performance_Testing |PDR.AFLR Performance Testing]]


[[3D_Slicer_CBC3D_Extension | 3D Slicer CBC3D Extension ]]
[[Internal:PDR_AFLR_Performance_AIAA |AIAA PDR.AFLR Performance Data]]


== Christos ==
[[Internal:Report_Status |Old Reports]]
'''[https://odu.box.com/s/y0ysv4wzoazsf2bv5aoc5wlkm8z9kyxb All papers]'''


'''[https://odu.box.com/s/2jac4kkj4fy93sai6qogwnmamhrrjpsn All presentations]'''
[[Internal:PsC_AFLR_Performance |PsC.AFLR Performance Data]]


<hr>
[[Internal:Next_Generation_Boundary_Layer |Next Generation Boundary Layer]]


[https://odu.box.com/s/jy2ddja7gziqq7kishma5g59f8rdq27r Adaptive CDT3D paper]
[[Internal:CDT3D_GPU_Smoothing | CDT3D GPU Smoothing]]


[https://odu.box.com/s/c7umodgo9dmknriap7820d0k5a1wkp7x Parallel Grid Adaptation Paper (UGAWG) ]
[[Internal:Distributed_CDT3D_Notes | Distributed CDT3D Notes]]


[[Internal:Adaptive_Meshing_For_APBNRR]]
[[Internal:I2M_Notes | Image-to-Mesh Conversion Project Notes]]


[[Internal:Experiences_Data_CDT3D_PDR_PODM | PREMA.CDT3D and PDR.PODM Experiences Data]]


=== Emmanuel ===
[[Internal:Quantum Information Science (QIS General) |Quantum Information Science (QIS General)]]


[https://docs.google.com/presentation/d/1Fjt5PoDPXa715nOAjn0F4IJpdhscIGnlaQvweqFnB0U Adaptivity PPoSS slides]
[[Internal:Quantum_Edge_Detection |Quantum Edge Detection]]


[https://docs.google.com/presentation/d/1RDtQufImuo5J1pKioIYDuTWCeX1UtjKyx7kQ2i24Tmo/edit?usp=sharing  CNF HPC slides]
[[Internal:Hybrid Computing |Hybrid Computing]]


[[Internal:Quantum Machine Learning |Quantum Machine Learning]]


[https://git-community.cs.odu.edu/nikos/SciTech_2019/blob/draft/main.pdf Scitech Journal paper latest draft]
[[Internal:Quantum Natural Language Processing |Quantum Natural Language Processing]]


=== Chris ===


[https://odu.box.com/s/igricc4r2gxmjjhaf0q03dpqt5j9ssm3 Candidacy exam (document)]
[[Internal:QDist | Quantum Euclidean Distance (QDist)]]
[https://odu.box.com/s/e7oznwyfb2p4nic61gzy2chkkqt6ltrb (presentation .pptx)]
[https://odu.box.com/s/2ok3f4sqtbu4h80gku156ys2e29743o7 (presentation pdf)]


[[Internal:Adaptive_CDT3D_Results | Metric Adaptive CDT3D results]]
[[Internal:QHD | Quantum Hausdorff Distance (QHD)]]


[[Internal:Argobots_and_CDT3D | Argobots and CDT3D]]
[[Internal:QED | Quantum Edge Detection (QED)]]


[[Internal:4D_Predicates_Benchmark | 4D predicates benchmark]]
[[Internal:DQHED |Distributed Hadamard Quantum Edge Detection (DQHED)]]


[[CNF:Mesh Sizing for CNF data]]
[[Internal:QNEM |Quantum Nested Expectation Maximization (QNEM)]]


[[Internal:QCED |Quantum Canny Edge Detection (QCED)]]


[[Internal:Quantum_PDEs |Quantum PDEs]]


[[Internal:weekly_report_rector |Weekly Report]]


[[Internal:ACDT3D        | Metric Adaptive CDT3D Notes ]]
=== Devon ===
[[Internal:Quantum_Clustering |Quantum Clustering]]


== Former Students ==


=== Angelos ===


[[Internal:GPCD | GPCD]]


[https://odu.box.com/s/x44ts38ojpza5or4j8g5zt0dna8apgo7 Parallel Mesh Generation review paper]
[[Internal:APBNRRExecutionStatus | APBNRR Execution Status]]


[[Internal:PAPBNRRComparison | Pristine vs New PAPBNRR]]


[https://lbpw.larc.nasa.gov/ AIAA Sonic Boom Prediction Workshop (next in 2020)]
[[Internal:APBNRRMachineLearning | APBNRR Machine Learning]]


[[Internal:CDT3D_SU2 | SU2 and grid requirements ]]
[[Internal: SlicerExtensions | Slicer Extensions]]


[[Internal:Boundary_Layer_References | Boundary Layer References ]]
=== Christos ===
'''[https://olddominion-my.sharepoint.com/:f:/r/personal/nchrisoc_odu_edu/Documents/From_Box/CRTC_Students/ChristosT/papers  All papers]'''


[[External:Mesh_Generation_Articles_In_Journals | Some Mesh Generation Journal papers]]
'''[https://olddominion-my.sharepoint.com/:f:/r/personal/nchrisoc_odu_edu/Documents/From_Box/CRTC_Students/ChristosT/presentations All presentations]'''


[https://docs.google.com/document/d/1txyCu6ibheH19hi3nZ10LgHm-WzglUrT5y0AaO__VYk/edit?usp=sharing  PhD Tentative Shedule]
<hr>


[https://olddominion-my.sharepoint.com/:b:/r/personal/nchrisoc_odu_edu/Documents/From_Box/CRTC_Students/ChristosT/dissertation/christos_dissertation.pdf Dissertation .pdf]


[https://odu.box.com/s/sfkd5l3d9r5865qbsovx0eo6gwlaiask Poster IMR]
[https://www.overleaf.com/6438559258mdmsnbpffztx speculative meshing operations using tasks paper - overleaf]


[https://odu.box.com/s/1sok1edideblq4nctbufg79vud0oiu8f NIA presentation (September 2018) ]  
[https://www.overleaf.com/3459466599cnnfkhzmkczs Adaptive CDT3D paper - overleaf]


[[Internal:IMR_2018_Short_Course | IMR 2018 Short Course notes]]
[https://www.overleaf.com/8242192311zntgrtsphkvv Parallel Grid Adaptation Paper (UGAWG) - overleaf  ]


[[Internal:Adaptive_Meshing_For_APBNRR]]


[https://docs.google.com/presentation/d/1Fjt5PoDPXa715nOAjn0F4IJpdhscIGnlaQvweqFnB0U Adaptivity PPoSS slides]


[[Internal:ACDT3D_Scitech2018 | SciTech 2018]]
[https://docs.google.com/presentation/d/1RDtQufImuo5J1pKioIYDuTWCeX1UtjKyx7kQ2i24Tmo/edit?usp=sharing  CNF HPC slides]




[[Internal:Machine_Learning_CDT3D |  Machine Learning and CDT3D]]
[https://git-community.cs.odu.edu/nikos/SciTech_2019/blob/draft/main.pdf Scitech Journal paper latest draft]


[[Internal:AIAA_2018_CDT3D | CDT3D AIAA Aviation Paper ]]
[https://olddominion-my.sharepoint.com/:b:/r/personal/nchrisoc_odu_edu/Documents/From_Box/CRTC_Students/ChristosT/candidacy_exam/cand_exam.pdf Candidacy exam (document)]
[https://olddominion-my.sharepoint.com/:p:/r/personal/nchrisoc_odu_edu/Documents/From_Box/CRTC_Students/ChristosT/candidacy_exam/PhD_Candidacy_presentation.pptx (presentation .pptx)]
[https://olddominion-my.sharepoint.com/:b:/r/personal/nchrisoc_odu_edu/Documents/From_Box/CRTC_Students/ChristosT/candidacy_exam/PhD_Candidacy%20_presentation.pdf (presentation pdf)]


[[Internal:PODM4D_predicates | PODM4D fine grain concurrency benchmark ]]
[[Internal:Adaptive_CDT3D_Results | Metric Adaptive CDT3D results]]


[[Internal:AIAA_Geometry_and_Mesh_Generation_Workshop | Geometry and Mesh Generation Workshop ]]
[[Internal:Argobots_and_CDT3D | Argobots and CDT3D]]


[[Internal:4D_Predicates_Benchmark | 4D predicates benchmark]]


[[Internal:CDT3D_RoadMap |CDT3D RoadMap]]
[[CNF:Mesh Sizing for CNF data]]


[[Internal:Computational_Resources | High capacity Computational Resources ]]
[[Internal:ACDT3D        | Metric Adaptive CDT3D Notes ]]


[[NDAM:Main | PODM 4D and Anisotropy ]]
[https://olddominion-my.sharepoint.com/:b:/r/personal/nchrisoc_odu_edu/Documents/frombox/CRTC_Students/ChristosT/candidacy_exam/paper.pdf Parallel Mesh Generation review paper]


[https://docs.google.com/document/d/1jzTiohDA51VHXc65tfIFkmjrKM_8yQn7YYj2txEyhyU MPI PDR.PODM 16,000 cores data and other]
[https://lbpw.larc.nasa.gov/ AIAA Sonic Boom Prediction Workshop (next in 2020)]


== Kevin ==
[[Internal:CDT3D_SU2 | SU2 and grid requirements ]]
[[Internal:PDR_AFLR |PDR.AFLR Stability and Scalability]]


[[Internal:PDR_AFLR_Progress_Report |PDR.AFLR Progress Report]]
[[Internal:Boundary_Layer_References | Boundary Layer References ]]


[[AFLR_Point_Spacing/Distribution_Function_Parameters | AFLR Point Spacing/Distribution Function Parameters]]
[[External:Mesh_Generation_Articles_In_Journals | Some Mesh Generation Journal papers]]


[[Internal:PDR_AFLR_Performance_Testing |PDR.AFLR Performance Testing]]
[https://docs.google.com/document/d/1txyCu6ibheH19hi3nZ10LgHm-WzglUrT5y0AaO__VYk/edit?usp=sharing  PhD Tentative Shedule]


[[Internal:PDR_AFLR_Performance_AIAA |AIAA PDR.AFLR Performance Data]]
[https://odu.box.com/s/sfkd5l3d9r5865qbsovx0eo6gwlaiask Poster IMR]


[[Internal:Report_Status |Report Status]]
[https://odu.box.com/s/1sok1edideblq4nctbufg79vud0oiu8f NIA presentation (September 2018) ]  


[[Internal:PsC_AFLR_Performance |PsC.AFLR Performance Data]]
[[Internal:IMR_2018_Short_Course | IMR 2018 Short Course notes]]


[[Internal:Next_Generation_Boundary_Layer |Next Generation Boundary Layer]]
[[Internal:ACDT3D_Scitech2018 | SciTech 2018]]


== Polykarpos ==
[[Internal:Machine_Learning_CDT3D |  Machine Learning and CDT3D]]
[[PREMA Shared Memory]]


[[Internal:IMR_2018_Runtime_Systems | IMR 2018 Runtime Systems]]
[[Internal:AIAA_2018_CDT3D | CDT3D AIAA Aviation Paper ]]


[[Intel Xeon Phi and High Bandwidth Memory]]
[[Internal:PODM4D_predicates | PODM4D fine grain concurrency benchmark ]]


[[CNF:Machine_Learning | CNF Machine Learning Project]]
[[Internal:AIAA_Geometry_and_Mesh_Generation_Workshop | Geometry and Mesh Generation Workshop ]]


[[CNF:ML_Data_Denoise | Track denoising with ML]]
[[Internal:CDT3D_RoadMap |CDT3D RoadMap]]


[https://docs.google.com/presentation/d/1rF3rElnBCsKR_Z_66nTCmMqSZa3b51mEzswiLz_3d3Q/edit?usp=sharing  CNF HPC Workshop Slides]
[[Internal:Computational_Resources | High capacity Computational Resources ]]


[[PREMA SW4| SW4 Benchmark with PREMA]]
[[NDAM:Main | PODM 4D and Anisotropy ]]


[[PDR.PODM Distributed Memory| PDR.PODM.PREMA]]
[https://docs.google.com/document/d/1jzTiohDA51VHXc65tfIFkmjrKM_8yQn7YYj2txEyhyU MPI PDR.PODM 16,000 cores data and other]


Future Work


[[Internal:TAPAS]]


== Spiros ==
=== Spiros ===
'''Image-To-Mesh Conversion Projects'''
'''Image-To-Mesh Conversion Projects'''


Line 156: Line 181:


[[Internal:PODM_4D | PODM 4D]]
[[Internal:PODM_4D | PODM 4D]]


'''BioInformatics Projects'''
'''BioInformatics Projects'''
Line 162: Line 186:
[[Internal:GPCD | GPCD]]
[[Internal:GPCD | GPCD]]


'''Contrained Mesh Refinement Projects'''
[[Internal:CDT3D_GPU_Smoothing | CDT3D GPU Smoothing]]


'''CNF Related Projects'''
'''CNF Related Projects'''
Line 170: Line 197:


[[CNF:Smart_LookUp_Table_Utilities | Smart LookUp Table Utilities]]
[[CNF:Smart_LookUp_Table_Utilities | Smart LookUp Table Utilities]]
[[CNF:PartonsToNRRD | PartonsToNRRD]]


[[CNF:Weighted_Mesh_To_Image | Weighted Mesh To Image]]
[[CNF:Weighted_Mesh_To_Image | Weighted Mesh To Image]]


[[Internal:TetGen_CNF | TetGen CNF]]
[[Internal:TetGen_CNF | TetGen CNF]]


'''Utilities Projects'''
'''Utilities Projects'''
Line 190: Line 217:
[[Internal:GPU_Usage | GPU Usage]]
[[Internal:GPU_Usage | GPU Usage]]


=== Medical Imaging SubGroup (Eleni, Thomas , Angelos) ===
[[Internal:ReportCloud | Cloud Report]]
[[Internal:Preprocess_Medical_Images |  Preprocessing of Medical Images]]
[[Internal:Execution_And_Evaluation_Medical_Images |  Execution and Evaluation of Medical Imaging data]]
=== Joi ===
[[Tasks | Tasks ]]
[[I2M_Conversion_Tool | Image-to-Mesh (I2M) Conversion Tool]]
[[3D_Slicer_CBC3D_Extension | 3D Slicer CBC3D Extension ]]


'''Reports'''
'''Reports'''
Line 196: Line 237:


== General ==
== General ==
===Conference Slides ===
===Conference Slides ===
[https://odu.box.com/s/vev5nqudpd5yq143xfq99y7b8uyf0j4e AI in Nuclear Physics 2020]
[https://odu.box.com/s/vev5nqudpd5yq143xfq99y7b8uyf0j4e AI in Nuclear Physics 2020]
Line 227: Line 269:
=== Other ===
=== Other ===
http://livingreview.in.tum.de/welcome/
http://livingreview.in.tum.de/welcome/
=== CRTC lab Virtual meetings ===
* 2020.01.18 - Christos
:* Unified Approach for Speculative Operations, [https://docs.google.com/presentation/d/1haL6NVwZzRVG0W71KoWmqLKgxkf6to2sUsdTH5Xn4kw (presentation)], [https://olddominion-my.sharepoint.com/:f:/r/personal/ctsol001_odu_edu/Documents/Parallel_Operations?csf=1&web=1&e=hQ8rPg (shared directory)]
* 2021.02.03 - Kevin & Spiros
:* Introduction to GPU Parallelism, [https://drive.google.com/file/d/1vW3VJXi04JB2N7XpVoNnXXSNv4i1Pnet/view?usp=sharing (presentation)]
* 2021.02.10 - Kevin & Spiros
:* GPU Architecture, [https://drive.google.com/file/d/1LfDwsbdscSpTk3eBT74lfIlSyD-W_Zwh/view?usp=sharing (presentation)]

Latest revision as of 13:39, 21 December 2024

Current Students

Polykarpos

PREMA Shared Memory

IMR 2018 Runtime Systems

Intel Xeon Phi and High Bandwidth Memory

CNF Machine Learning Project

Track denoising with ML

CNF HPC Workshop Slides

SW4 Benchmark with PREMA

PDR.PODM.PREMA

PREMA-Argobots Paper

Heterogeneousarchitecturesforcomputationalintensiveapplications:Acost-effectivenessanalysis

Internal:TAPAS

Kevin

Timetable/Primary Reports/Notes

PDR.AFLR Stability and Scalability

PDR.AFLR Progress Report

AFLR Point Spacing/Distribution Function Parameters

PDR.AFLR Performance Testing

AIAA PDR.AFLR Performance Data

Old Reports

PsC.AFLR Performance Data

Next Generation Boundary Layer

CDT3D GPU Smoothing

Distributed CDT3D Notes

Image-to-Mesh Conversion Project Notes

PREMA.CDT3D and PDR.PODM Experiences Data

Emmanuel

Quantum Information Science (QIS General)

Quantum Edge Detection

Hybrid Computing

Quantum Machine Learning

Quantum Natural Language Processing

Chris

Quantum Euclidean Distance (QDist)

Quantum Hausdorff Distance (QHD)

Quantum Edge Detection (QED)

Distributed Hadamard Quantum Edge Detection (DQHED)

Quantum Nested Expectation Maximization (QNEM)

Quantum Canny Edge Detection (QCED)

Quantum PDEs

Weekly Report

Devon

Quantum Clustering

Former Students

Angelos

GPCD

APBNRR Execution Status

Pristine vs New PAPBNRR

APBNRR Machine Learning

Slicer Extensions

Christos

All papers

All presentations


Dissertation .pdf

speculative meshing operations using tasks paper - overleaf

Adaptive CDT3D paper - overleaf

Parallel Grid Adaptation Paper (UGAWG) - overleaf

Internal:Adaptive_Meshing_For_APBNRR

Adaptivity PPoSS slides

CNF HPC slides


Scitech Journal paper latest draft

Candidacy exam (document) (presentation .pptx) (presentation pdf)

Metric Adaptive CDT3D results

Argobots and CDT3D

4D predicates benchmark

CNF:Mesh Sizing for CNF data

Metric Adaptive CDT3D Notes

Parallel Mesh Generation review paper

AIAA Sonic Boom Prediction Workshop (next in 2020)

SU2 and grid requirements

Boundary Layer References

Some Mesh Generation Journal papers

PhD Tentative Shedule

Poster IMR

NIA presentation (September 2018)

IMR 2018 Short Course notes

SciTech 2018

Machine Learning and CDT3D

CDT3D AIAA Aviation Paper

PODM4D fine grain concurrency benchmark

Geometry and Mesh Generation Workshop

CDT3D RoadMap

High capacity Computational Resources

PODM 4D and Anisotropy

MPI PDR.PODM 16,000 cores data and other


Spiros

Image-To-Mesh Conversion Projects

Tessellate 2D

PODM 3D

PODM 4D

BioInformatics Projects

GPCD

Contrained Mesh Refinement Projects

CDT3D GPU Smoothing

CNF Related Projects

CNF Data Generation

Monte Carlo Event Generator using a Tessellation

Smart LookUp Table Utilities

PartonsToNRRD

Weighted Mesh To Image

TetGen CNF

Utilities Projects

Synthetical Image Data Generator

MeshIO


Other Projects

PDM ND

GPU Usage

Medical Imaging SubGroup (Eleni, Thomas , Angelos)

Cloud Report

Preprocessing of Medical Images

Execution and Evaluation of Medical Imaging data


Joi

Tasks

Image-to-Mesh (I2M) Conversion Tool

3D Slicer CBC3D Extension

Reports

CNF Adaptivity

General

Conference Slides

AI in Nuclear Physics 2020

Proposal Resources

Internal:NSF_PPOSS_Funded_Proposals

Notes

Internal:CNF_Workshop

Internal:CNF_HPC_Workshop_2019

Internal:Kokkos_Tutorial_2020_02_19

Internal:Intel_OneAPI_Tutorial_2020_02_20

Papers

T-infinity: The Dependency Inversion Principle for Rapid and Sustainable Multidisciplinary Software Development

Meshless Voronoi on the GPU, Nicolas Ray,Dmitry Sokolov,Sylvain Lefebvre,Bruno Lévy

Democratizing Mesh Adaptation forComputational Fluid Dynamics Michael Park

Internal:Hashing_Meshes

Videos

Using Graphs for Unstructured Data (Keshav Pingali)

Big Data Brain Maps at Argonne National Laboratory (Bobby Kasthuri), ATPESC 2017

Other

http://livingreview.in.tum.de/welcome/

CRTC lab Virtual meetings

  • 2020.01.18 - Christos
  • 2021.02.03 - Kevin & Spiros
  • 2021.02.10 - Kevin & Spiros