Difference between revisions of "Medical Imaging Example Meshes"
From crtc.cs.odu.edu
Spyridon97 (talk | contribs) (→Ircad2-Removed-Tissues) |
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=Head-Neck= | =Head-Neck= | ||
* Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002) | * Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002) | ||
| − | * Delta = default | + | * Delta = default case: 205,416 tetrahedra |
* Delta = 1.5 case: 770,853 tetrahedra | * Delta = 1.5 case: 770,853 tetrahedra | ||
| Line 19: | Line 19: | ||
Commands to generate meshes : | Commands to generate meshes : | ||
| − | '''Delta = default | + | '''Delta = default :''' [https://odu.box.com/s/adx5yrnxrqia908vzcotqpkpl3dpvttv Output Mesh] |
<pre> | <pre> | ||
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk | docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk | ||
| Line 31: | Line 31: | ||
=Brain-With-Tumor-Case17= | =Brain-With-Tumor-Case17= | ||
* Input image : Dimensions (448x512x176) with spacing (0.488281x0.488281x1) | * Input image : Dimensions (448x512x176) with spacing (0.488281x0.488281x1) | ||
| − | * Uniform with Delta = default | + | * Uniform with Delta = default case: 222,540 tetrahedra |
| − | * Graded with Delta = default | + | * Graded with Delta = default case: 94,383 tetrahedra |
<gallery mode="packed" heights=350px> | <gallery mode="packed" heights=350px> | ||
| Line 57: | Line 57: | ||
=Knee-Char= | =Knee-Char= | ||
* Input image : Dimensions (512x512x119) with spacing (0.27734x0.27734x1) | * Input image : Dimensions (512x512x119) with spacing (0.27734x0.27734x1) | ||
| − | * Uniform with Delta = default | + | * Uniform with Delta = default case: 386,869 tetrahedra |
| − | * Graded with Delta = default | + | * Graded with Delta = default case: 274,309 tetrahedra |
<gallery mode="packed" heights=350px> | <gallery mode="packed" heights=350px> | ||
Revision as of 14:50, 2 March 2020
The directory containing the input data is Medical_Imaging_Data.
Head-Neck
- Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002)
- Delta = default case: 205,416 tetrahedra
- Delta = 1.5 case: 770,853 tetrahedra
Commands to generate meshes :
Delta = default : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk
Delta = 1.5 : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk
Brain-With-Tumor-Case17
- Input image : Dimensions (448x512x176) with spacing (0.488281x0.488281x1)
- Uniform with Delta = default case: 222,540 tetrahedra
- Graded with Delta = default case: 94,383 tetrahedra
Commands to generate meshes :
Uniform : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Brain-With-Tumor-Case17.nii --output ./Brain-With-Tumor-Case17,d=1.76001.vtk
Graded : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Brain-With-Tumor-Case17.nii --volume-grading --output ./Brain-With-Tumor-Case17,d=1.76001,graded.vtk
Knee-Char
- Input image : Dimensions (512x512x119) with spacing (0.27734x0.27734x1)
- Uniform with Delta = default case: 386,869 tetrahedra
- Graded with Delta = default case: 274,309 tetrahedra
Commands to generate meshes :
Uniform : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Knee-Char,d=1.19.vtk
Graded : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --volume-grading --output ./Knee-Char,d=1.19,graded.vtk
Ircad2
- Input image : Dimensions (512x512x219) with spacing (0.976562x0.976562x1.40002)
- Uniform with Delta = 1 case: tetrahedra
- Graded with Delta = 1 case: 6,072,751 tetrahedra
Commands to generate meshes :
Uniform : [ Output Mesh]
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Ircad2.nrrd --delta 2 --output ./Ircad2,d=2.vtk
Graded : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Ircad2.nrrd --delta 1 --volume-grading --output ./Ircad2,d=1,graded.vtk
