Difference between revisions of "Medical Imaging Example Meshes"
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=Ircad2-Removed-Tissues= | =Ircad2-Removed-Tissues= | ||
| − | + | * Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002) | |
| + | * Uniform case: 205,416 tetrahedra | ||
| + | * Graded case: 770,853 tetrahedra | ||
| − | + | [[File:Head-Neck,d=2.49023.png|500px|Head-Neck,d=2.49023.png]] | |
| − | < | + | <gallery mode="packed" heights=350px> |
| + | File:Ircad2-Removed-Tissues,d=5.png | ||
| + | </gallery> | ||
| − | [[ | + | Commands to generate meshes : |
| + | |||
| + | '''Delta = 2.49023 :''' [ Output Mesh] | ||
| + | <pre> | ||
| + | docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk | ||
| + | </pre> | ||
| + | |||
| + | '''Delta = 1.5 :''' [ Output Mesh] | ||
| + | <pre> | ||
| + | docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk | ||
| + | </pre> | ||
Revision as of 17:20, 26 February 2020
The directory containing the input data is Medical_Imaging_Data.
Head-Neck
- Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002)
- Delta = 2.49023 (Default calculated value) case: 205,416 tetrahedra
- Delta = 1.5 case: 770,853 tetrahedra
Commands to generate meshes :
Delta = 2.49023 : [ Output Mesh]
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk
Delta = 1.5 : [ Output Mesh]
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk
Brain-With-Tumor-Case17
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk
Knee-Char
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Knee-Char.mha --delta 1.5 --output ./Knee-Char,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Knee-Char.mha --delta 1.5 --volume-grading --output ./Knee-Char,d=1.5,grading.vtk
Ircad2-Removed-Tissues
- Input image : Dimensions (255x255x229) with spacing (0.976562x0.976562x1.40002)
- Uniform case: 205,416 tetrahedra
- Graded case: 770,853 tetrahedra
Commands to generate meshes :
Delta = 2.49023 : [ Output Mesh]
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Head-Neck.mha --output ./Head-Neck,d=2.49023.vtk
Delta = 1.5 : [ Output Mesh]
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./Medical_Imaging_Data/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk
