Difference between revisions of "Medical Imaging Example Meshes"
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The directory containing the input data is [https://odu.box.com/s/wd0i18giti2zo330y19xhkqu8wjzgf7j Medical_Imaging_Data]. | The directory containing the input data is [https://odu.box.com/s/wd0i18giti2zo330y19xhkqu8wjzgf7j Medical_Imaging_Data]. | ||
Revision as of 16:55, 26 February 2020
The directory containing the input data is Medical_Imaging_Data.
Head-Neck 2
- Input distribution size : 1,000,000 cells
- Uniform case: 768,033 tetrahedra
- Adapted case: 264,762 tetrahedra
Commands to generate meshes :
Uniform : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./CNF_Data/3D/CFF_14052019/GPDMMS13_140519.nrrd --image-segmentation --linear-interpolation --output ./GPDMMS13_140519,d=1,uniform.vtk
Adapted : Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./CNF_Data/3D/CFF_14052019/GPDMMS13_140519.nrrd --cnf --weight-limit 0.05 --min-edge 1 --output ./GPDMMS13_140519,d=5,wl=0.05,me=1.vtk
Head-Neck
Generated mesh with delta = 2, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 2 --output ./Head-Neck,d=2.vtk
Generated mesh with delta = 1.5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Head-Neck.mha --delta 1.5 --output ./Head-Neck,d=1.5.vtk
Brain-With-Tumor-Case17
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --output ./Brain-With-Tumor-Case17,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Brain-With-Tumor-Case17.nii --delta 1.5 --volume-grading --output ./Brain-With-Tumor-Case17,d=1.5,grading.vtk
Knee-Char
Generated mesh with delta = 1,5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --output ./Knee-Char,d=1.5.vtk
Generated mesh with delta = 1.5 and volume-grading, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Knee-Char.mha --delta 1.5 --volume-grading --output ./Knee-Char,d=1.5,grading.vtk
Ircad2-Removed-Tissues
Generated mesh with delta = 5, Output Mesh
docker run -v $(pwd):/data/ crtc_i2m podm3d --input ./NRL_SHARE/Ircad2-Removed-Tissues.nrrd --delta 5 --output ./Ircad2-Removed-Tissues,d=5.vtk
